Update readme and rename config java

tooling/Notes.md

@@ -13,10 +13,18 @@ CREATE TABLE Functions (
     filepath TEXT,
     name TEXT,
     address TEXT,
+    type INTEGER,
     PRIMARY KEY (name, filepath)
 );
 ```
 
+Where type is one of the following:
+
+- 0: Auto
+- 1: Fix
+- 2: Stub
+- 3: Ref
+
 **Purpose**: Stores function definitions that have function bodies (actual implementations)
 - `filepath`: Source file path where the function is defined
 - `name`: Function name (identifier)
@@ -29,6 +37,7 @@ CREATE TABLE Imports (
     filepath TEXT,
     name TEXT,
     address TEXT,
+    type INTEGER,
     PRIMARY KEY (name, filepath)
 );
 ```